#!/usr/bin/env bash
grep -r "^--S" user_input/*
grep -r "^Nm =" user_input/*
grep -r "^nhpp =" user_input/* | grep T1
grep -r "^mp =" user_input/*
grep -r "^ms =" user_input/*
grep -r "^genomeSize =" user_input/*
#grep -r "^cap =" user_input/*
#grep -r "^initDemo =" user_input/*
grep -r "^nLocus =" user_input/*
grep -r "^fluxSource =" user_input/*
grep -r "^assortMating =" user_input/*
grep -r -A 10 "^envEffParam =" user_input/* | grep T1
grep -r -A 10 "^zoptParam =" user_input/* | grep T1
grep -r -A 7 "^selIntParam =" user_input/* | grep T1
grep -r "lociList =" user_input/* | grep T1
grep -r "^mapLength =" user_input/*
grep -r "^mapWidth =" user_input/*
grep -r "^simLength =" user_input/*
grep -r "^nAllpLoci =" user_input/*


